IMAGE DATA RESOURCE
Euro-BioImaging features the Image Data Resource (IDR), an online, public resource that stores, integrates and serves image datasets from published scientific studies. The IDR aims to make previously unattainable datasets publicly available, allowing searching, viewing, mining and even processing and analyzing large complex multidimensional life sciences image data. All datasets have been annotated with author-supplied metadata.
Many datasets in IDR have been produced by imaging technologies offered by EuBI, below are few examples.
In the future, IDR will be closely integrated with the "final" version of this EuBI Web Access Portal, and in time we hope to be able to offer sample data of most EuBI imaging technologies. If you have a dataset you think could be added to the IDR, please don't hesitate to contact us.
As part of constructing a fully functional Euro-BioImaging Image Data Resource, EuBI has also started to assemble a catalogue of different public image data resources, which are independent resources and have no connectivity between them. This catalogue is hosted at BioSharing.org and is available here. The EuBI IDR is hosted at EMBL-EBI and can also be accessed from here.
Many datasets in IDR have been produced by imaging technologies offered by EuBI, below are few examples.
In the future, IDR will be closely integrated with the "final" version of this EuBI Web Access Portal, and in time we hope to be able to offer sample data of most EuBI imaging technologies. If you have a dataset you think could be added to the IDR, please don't hesitate to contact us.
As part of constructing a fully functional Euro-BioImaging Image Data Resource, EuBI has also started to assemble a catalogue of different public image data resources, which are independent resources and have no connectivity between them. This catalogue is hosted at BioSharing.org and is available here. The EuBI IDR is hosted at EMBL-EBI and can also be accessed from here.
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Publication Title: A Genomic Multiprocess Survey of Machineries that Control and Link Cell Shape, Microtubule Organization, and Cell-Cycle Progression Species: Schizosaccharomyces pombe Experiment Type: Gene deletion screen Technologies used: Spinning disc confocal microscopy system and High throughput microscopy Click here to view in Image viewer Click here to view the complete data in IDR |
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Publication Title: Histopathology study of 14 tissues from mice with 10 different mitotic gene knockouts Species: Mus musculus Experiment Type: Whole slide imaging Technology used: Bright-field Microscopy Click here to view in Image viewer Click here to view the complete data in IDR |
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Publication Title: Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype Species: Homo sapiens Experiment Type: RNAi screen Technology used: High-Throughput Microscopy Click here to view in Image viewer Click here to view the complete data in IDR |
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Title: Plankton Environmental High-Content Fluorescence Microscopy (e-HCFM) Species: Multispecies Experiment Type: Geographic screen Technologies used: Laser scanning confocal microscopy Click here to view in Image viewer Click here to view the complete data in IDR |
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Publication Title: Cell shape and the microenvironment regulate nuclear translocation of NF-κB in breast epithelial and tumor cells Species: Homo sapiens Experiment Type: High content image analysis Technology used: High-Throughput Microscopy Click here to view in Image viewer Click here to view the complete data in IDR |
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