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IMAGE DATA RESOURCE


Euro-BioImaging features the Image Data Resource (IDR), an online, public resource that stores, integrates and serves image datasets from published scientific studies. The IDR aims to make previously unattainable datasets publicly available, allowing searching, viewing, mining and even processing and analyzing large complex multidimensional life sciences image data. All datasets have been annotated with author-supplied metadata.

Many datasets in IDR have been produced by imaging technologies offered by EuBI, below are few examples.
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In the future, IDR will be closely integrated with the "final" version of this EuBI Web Access Portal, and in time we hope to be able to offer sample data of most EuBI imaging technologies. If you have a dataset you think could be added to the IDR, please don't hesitate to contact us.

As part of constructing a fully functional Euro-BioImaging Image Data Resource, EuBI has also started to assemble a catalogue of different public image data resources, which are independent resources and have no connectivity between them. This catalogue is hosted at BioSharing.org and is available here. The EuBI IDR is hosted at EMBL-EBI and can also be accessed from here. 

Publication Title: A Genomic Multiprocess Survey of Machineries that Control and Link Cell Shape, Microtubule Organization, and Cell-Cycle Progression
Species: Schizosaccharomyces pombe
Experiment Type: Gene deletion screen
Technologies used: Spinning disc confocal microscopy system and High throughput microscopy


Click here to view in Image viewer
Click here to view the complete data in IDR



Publication Title: Histopathology study of 14 tissues from mice with 10 different mitotic gene knockouts
Species: Mus musculus
Experiment Type: Whole slide imaging
Technology used: Bright-field Microscopy


Click here to view in Image viewer
Click here to view the complete data in IDR



Publication Title: Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype
Species: Homo sapiens
Experiment Type: RNAi screen
Technology used: High-Throughput Microscopy


Click here to view in Image viewer
Click here to view the complete data in IDR



Title: Plankton Environmental High-Content Fluorescence Microscopy (e-HCFM)
Species: Multispecies
Experiment Type: Geographic screen
Technologies used: Laser scanning confocal microscopy


Click here to view in Image viewer
Click here to view the complete data in IDR



Publication Title: Cell shape and the microenvironment regulate nuclear translocation of NF-κB in breast epithelial and tumor cells
Species: Homo sapiens
Experiment Type: High content image analysis
Technology used: High-Throughput Microscopy


Click here to view in Image viewer
Click here to view the complete data in IDR



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  • Home
  • Locations and Technologies
  • Apply for access
  • Reporting and Feedback
  • Image Data Resource
  • Review of Applications
  • New Technologies
  • Document Gallery
  • BioImage Competition